PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00365.1.g00020.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29058.6 Da    PI: 10.6246
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00365.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.9e-2997147151
                                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                     krien + rqv+fskRrng+lKKA+ELSvLCdaeva+++fs++gklye++s
  Zpz_sc00365.1.g00020.1.sm.mkhc  97 KRIENPTSRQVSFSKRRNGLLKKAFELSVLCDAEVALVVFSTRGKLYEFAS 147
                                     79***********************************************86 PP

2K-box55.91.8e-191502123799
                           K-box  37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                     +llGe Le++s++eL++Le +Leksl+ +R +K++ll eq+++l++ke  l+++n++Lr+k +
  Zpz_sc00365.1.g00020.1.sm.mkhc 150 KLLGERLEECSIEELHSLEVKLEKSLRIVRGRKTQLLEEQVRKLKEKEMTLRKNNEDLREKCK 212
                                     79**********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.1689149IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-3789148IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-3091111IPR002100Transcription factor, MADS-box
CDDcd002656.16E-3591147No hitNo description
SuperFamilySSF554552.62E-2791149IPR002100Transcription factor, MADS-box
PfamPF003191.5E-2598145IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.58100217IPR002487Transcription factor, K-box
PRINTSPR004042.7E-30111126IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30126147IPR002100Transcription factor, MADS-box
PfamPF014863.8E-18150212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MARALPEKRP MSCSHNFPRM GPSGLTYPFP FFIWVPMKHH QRATPATNGS PPSSVSSSAW  60
LPPKLRHHPR SKPRQDSSIS LRTCDRSEMV RGKTQLKRIE NPTSRQVSFS KRRNGLLKKA  120
FELSVLCDAE VALVVFSTRG KLYEFASAGK LLGERLEECS IEELHSLEVK LEKSLRIVRG  180
RKTQLLEEQV RKLKEKEMTL RKNNEDLREK CKDQPLLVAP AAVDFMDVET ELYIGLPGRD  240
NRPNKAAIAV SQSNRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-1691148259Myocyte-specific enhancer factor 2A
3kov_B2e-1691148259Myocyte-specific enhancer factor 2A
3kov_I2e-1691148259Myocyte-specific enhancer factor 2A
3kov_J2e-1691148259Myocyte-specific enhancer factor 2A
3p57_A2e-1691148259Myocyte-specific enhancer factor 2A
3p57_B2e-1691148259Myocyte-specific enhancer factor 2A
3p57_C2e-1691148259Myocyte-specific enhancer factor 2A
3p57_D2e-1691148259Myocyte-specific enhancer factor 2A
3p57_I2e-1691148259Myocyte-specific enhancer factor 2A
3p57_J2e-1691148259Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5519154e-73AY551915.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985920.18e-78PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_012698462.18e-78PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_004985919.18e-78PREDICTED: MADS-box transcription factor 50 isoform X2
SwissprotQ9XJ601e-74MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLQ9FR856e-76Q9FR85_MAIZE; M5 protein
STRINGGRMZM2G171365_P012e-75(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-46AGAMOUS-like 19